| Aghadrumsee Primary School, Roslea | Primary | Controlled · 27 pupils |
| All Saint's Primary School, Tattysallagh | Primary | Catholic Maintained · 100 pupils |
| Ballinamallard Primary School | Primary | Controlled · 173 pupils |
| Belleek No 2 Primary School | Primary | Controlled · 37 pupils |
| Brookeborough Primary School | Primary | Controlled · 52 pupils |
| Bunscoil an Traonaigh, Lisnaskea | Primary | Other Maintained · 76 pupils |
| Christ the King Primary School, Omagh | Primary | Catholic Maintained · 194 pupils |
| Cooley Primary School, Sixmilecross | Primary | Controlled · 87 pupils |
| Denamona Primary School, Fintona | Primary | Controlled · 85 pupils |
| Derrygonnelly Primary School | Primary | Controlled · 49 pupils |
| Dromore Primary School, Tyrone | Primary | Controlled · 35 pupils |
| Enniskillen Integrated Primary School | Primary | Grant Maintained Integrated · 472 pupils |
| Enniskillen Model Primary School | Primary | Controlled · 423 pupils |
| Florencecourt Primary School | Primary | Controlled · 145 pupils |
| Gaelscoil Na gCrann, Omagh | Primary | Other Maintained · 193 pupils |
| Gibson Primary School, Omagh | Primary | Controlled · 320 pupils |
| Gortin Primary School, Omagh | Primary | Controlled · 57 pupils |
| Holy Family Primary School, Omagh | Primary | Catholic Maintained · 319 pupils |
| Holy Trinity Primary School, Mill Street | Primary | Catholic Maintained · 551 pupils |
| Irvinestown Primary School | Primary | Controlled · 185 pupils |
| Jones Memorial Primary School, Enniskillen | Primary | Controlled · 109 pupils |
| Kesh Primary School | Primary | Controlled · 267 pupils |
| Killyhommon Primary School, Enniskillen | Primary | Catholic Maintained · 63 pupils |
| Knocknagor Primary School, Trillick | Primary | Catholic Maintained · 46 pupils |
| Langfield Primary School, Drumquin | Primary | Controlled · 18 pupils |
| Lisbellaw Primary School | Primary | Controlled · 192 pupils |
| Maguiresbridge Primary School | Primary | Controlled · 118 pupils |
| McClintock Primary School, Seskinore | Primary | Controlled · 119 pupils |
| Moat Primary School, Lisnaskea | Primary | Controlled · 137 pupils |
| Newtownbutler Primary School | Primary | Controlled · 26 pupils |
| Omagh County Primary School | Primary | Controlled · 449 pupils |
| Omagh Integrated Primary School | Primary | Grant Maintained Integrated · 348 pupils |
| Our Lady of Lourdes Primary School, Greencastle | Primary | Catholic Maintained · 124 pupils |
| Queen Elizabeth II Primary School, Kilskeery | Primary | Controlled · 29 pupils |
| Roscavey Primary School, Beragh | Primary | Catholic Maintained · 38 pupils |
| Sacred Heart Primary School, Tattyreagh | Primary | Catholic Maintained · 81 pupils |
| St Brigid's Primary School, Altamuskin | Primary | Catholic Maintained · 56 pupils |
| St Brigid's Primary School, Mountfield | Primary | Catholic Maintained · 60 pupils |
| St Colmcille's Primary School, Carrickmore | Primary | Catholic Maintained · 438 pupils |
| St Columban's Primary School, Belcoo | Primary | Catholic Maintained · 114 pupils |
| St Conor's Primary School, Omagh | Primary | Catholic Maintained · 448 pupils |
| St Davog's Primary School, Belleek | Primary | Catholic Maintained · 103 pupils |
| St Dympna's Primary School, Dromore | Primary | Catholic Maintained · 218 pupils |
| St Joseph's Primary School, Donagh | Primary | Catholic Maintained · 77 pupils |
| St Joseph's Primary School, Drumquin | Primary | Catholic Maintained · 156 pupils |
| St Joseph's Primary School, Ederney | Primary | Catholic Maintained · 151 pupils |
| St Lawrence's Primary School, Fintona | Primary | Catholic Maintained · 244 pupils |
| St Macartan's Primary School, Roslea | Primary | Catholic Maintained · 71 pupils |
| St Martin's Primary School, Garrison | Primary | Catholic Maintained · 103 pupils |
| St Mary's Primary School, Brookeborough | Primary | Catholic Maintained · 70 pupils |
| St Mary's Primary School, Killesher | Primary | Catholic Maintained · 94 pupils |
| St Mary's Primary School, Killyclogher | Primary | Catholic Maintained · 317 pupils |
| St Mary's Primary School, Maguiresbridge | Primary | Catholic Maintained · 157 pupils |
| St Mary's Primary School, Mullymesker | Primary | Catholic Maintained · 127 pupils |
| St Mary's Primary School, Newtownbutler | Primary | Catholic Maintained · 181 pupils |
| St Mary's Primary School, Teemore | Primary | Catholic Maintained · 126 pupils |
| St Mary's Primary School, Tempo | Primary | Catholic Maintained · 141 pupils |
| St Naile's Primary School, Kinawley | Primary | Catholic Maintained · 102 pupils |
| St Ninnidh's Primary School, Derrylin | Primary | Catholic Maintained · 143 pupils |
| St Oliver Plunkett Primary School, Beragh | Primary | Catholic Maintained · 153 pupils |
| St Patrick's Primary School, Derrygonnelly | Primary | Catholic Maintained · 131 pupils |
| St Patrick's Primary School, Eskra | Primary | Catholic Maintained · 117 pupils |
| St Patrick's Primary School, Gortin | Primary | Catholic Maintained · 90 pupils |
| St Patrick's Primary School, Mullanaskea | Primary | Catholic Maintained · 163 pupils |
| St Paul's Primary School, Irvinestown | Primary | Catholic Maintained · 219 pupils |
| St Ronan's Primary School, Lisnaskea | Primary | Catholic Maintained · 340 pupils |
| St Ronan's Primary School, Recarson | Primary | Catholic Maintained · 129 pupils |
| St Scire's Primary School, Trillick | Primary | Catholic Maintained · 132 pupils |
| St Teresa's Primary School, Loughmacrory | Primary | Catholic Maintained · 167 pupils |
| St Tierney's Primary School, Roslea | Primary | Catholic Maintained · 116 pupils |
| Tattygar Primary School, Lisbellaw | Primary | Catholic Maintained · 55 pupils |
| Tempo Primary School | Primary | Controlled · 88 pupils |
| Tummery Primary School, Dromore | Primary | Catholic Maintained · 35 pupils |